Expression Analysis
   Expression Profile
   Differential Expression
   Correlation of Expression
Methylation Analysis
   Methylation Profile
   Differential Methylation
Clinical Analysis
   Survival Plot
   Clinical Profile
   Differential Clinical Parameter
Oncovirus Analysis 
   Expression Profile
   Methylation Profile
   Differential Expression
   Differential Methylation
   Survival Plot
   -Gene Associated Analysis
   -Virus Associated Analysis
   Clinical Profile
   Differential Clinical Parameter
   Virus Profile
Mutation Analysis 
   Mutation Profile
   Significantly Mutated Genes
   Survival Plot
   Mutation Clincial Profile
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Differential Methylation
Cancer selection:

 
Gene region:
Threshold:
FDR Adjusted p-value <   |Δβ| >  
     

User Guide:

Getting the list of genes whose methylation levels are most differential between normal and cancer samples.
(Methylation data is measured by Infinium HumanMethylation450K BeadChip)

  • Cancer selection: Select cancer type of interest from the drop-down menu.
  • Gene region: Select the region of gene that you are interested (Promoter, GeneBody, Promoter+GeneBody).
  • Threshold: : Set the threshold values of either or both parameters with which to filter the list of genes.
  • FDR Adjusted p-value: Set custom FDR(False Discovery Rate) adjusted p-value (q-value). Return genes with a q-value equal to or lower than threshold.
  • Δβ: Set custom beta difference value (beta value is to show the methylation level).

*Direct comparison of tumor and normal tissues may identify not only differences related to tumorigenesis, but also differences in tissue composition. Thus, the comparison results should be interpreted with caution.